Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_80342252_80345084_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

80342252 - 80345084

Intron Length:

2833

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAATTCC

5'SS Class:

strong_major

3'SS Sequence:

TTATGTCCTGCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTTTTAT

U12 Branch Point Sequence:

TTTCTTTTATGT

Flanking Amino Acid:

AIAILAIIFKSKRRETPYTD

Intron Amino Acid Position:

585

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.1

0.76

0.9

74.3

Major BPS

84.1

0.85

0.9

75.3

39.4

Major PPT

80.1

0.68

0.9

74.1

36.4

Minor 5ss

35.4

-1.7

2.9

44.6

43.4

Minor BPS

53.7

0.19

1.9

76.38

40.7

Associated Gene:

Gene:

EPHB6

Ensembl Gene ID:

ENSAPLG00000006930

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007264

80328671 - 80387604

58934