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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_80345200_80346049_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
80345200 - 80346049
Intron Length:
850

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
TCTTCCTTGCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTGCAT
U12 Branch Point Sequence:
GTGTGTGTATGT
Flanking Amino Acid:
GKMYFQTLMAGERSEMVQDR
Intron Amino Acid Position:
547

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.5
1.12
0.6
90.6
20.3
Major BPS
62.4
0.31
1.4
73.6
41.8
Major PPT
74.4
0.55
0.9
69.5
36.8
Minor 5ss
36.3
-1.6
3.3
49
47.2
Minor BPS
37
-0.9
2.5
55.41
47.1

Associated Gene:

Gene:
EPHB6
Ensembl Gene ID:
ENSAPLG00000006930
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007264
80328671 - 80387604
58934