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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_80357384_80361321_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
80357384 - 80361321
Intron Length:
3938

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTACCTTTCATT
Flanking Amino Acid:
ASDNSDAPCTGVPSAPRDLS
Intron Amino Acid Position:
338

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.9
90.9
28.7
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
85.1
0.79
0.8
76.9
37.4
Minor 5ss
41.2
-1
2.9
52.2
44.4
Minor BPS
60
0.4
1.7
77.99
38.7

Associated Gene:

Gene:
EPHB6
Ensembl Gene ID:
ENSAPLG00000006930
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007264
80328671 - 80387604
58934