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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_80378189_80378876_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
80378189 - 80378876
Intron Length:
688

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGCATT
5'SS Class:
strong_major
3'SS Sequence:
ACATCCATTATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATACAT
U12 Branch Point Sequence:
TCTCCCATACAT
Flanking Amino Acid:
IGWTTHPSDGWDEVSVLDDK
Intron Amino Acid Position:
54

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
1
81.8
38.5
Major BPS
62.6
0.31
1.1
70.6
34.3
Major PPT
66.3
0.37
0.9
59
36.1
Minor 5ss
44.9
-0.5
2.9
58.5
45.8
Minor BPS
48.8
-0
2
71.83
44.4

Associated Gene:

Gene:
EPHB6
Ensembl Gene ID:
ENSAPLG00000006930
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007264
80328671 - 80387604
58934