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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_80420818_80421591_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
80420818 - 80421591
Intron Length:
774

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGTAG
5'SS Class:
major
3'SS Sequence:
TTTCCCCTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GAGTTAT
U12 Branch Point Sequence:
TTGTGAGTTATT
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
69
38.3
Major BPS
55.8
0.14
1.4
49.4
46
Major PPT
81.5
0.71
0.7
73.4
31.5
Minor 5ss
35.4
-1.7
3.3
45.9
49.3
Minor BPS
39.5
-0.7
2.6
64.45
46.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007632
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007913
80419775 - 80421708
1934