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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_80426103_80427168_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
80426103 - 80427168
Intron Length:
1066

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTAAGACTT
5'SS Class:
major
3'SS Sequence:
AAAACTATCAAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTCAG
U12 Branch Point Sequence:
CTTTTCAGAAAA
Flanking Amino Acid:
IHRFIYGDAGESATAGKFLY
Intron Amino Acid Position:
136

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.4
0.53
1.1
69.2
41.7
Major BPS
76
0.65
1.5
85.7
34.9
Major PPT
49.3
-0
1.1
45.8
39.3
Minor 5ss
39.2
-1.2
3.3
54
43.7
Minor BPS
49.4
-0
1.8
66.27
39.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007639
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007926
80425967 - 80428390
2424