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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_80494758_80495927_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
80494758 - 80495927
Intron Length:
1170

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTATA
5'SS Class:
strong_major
3'SS Sequence:
TCTTATCTCCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TACTTCTTATCT
Flanking Amino Acid:
ILFVAFVGVAVAFPISDDDD
Intron Amino Acid Position:
14

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.8
84.9
26.2
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
81.1
0.7
0.8
73.1
37
Minor 5ss
34
-1.8
2.8
39.2
40.5
Minor BPS
67.9
0.64
1.6
80.51
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004517
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004645
80494235 - 80498920
4686