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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_80496094_80496703_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
80496094 - 80496703
Intron Length:
610

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTC|GTGAGTGGA
5'SS Class:
major
3'SS Sequence:
TTGTCTTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATGAC
U12 Branch Point Sequence:
GTAACTGTAAAG
Flanking Amino Acid:
WVLSAAHCYKSSIQVKLGEH
Intron Amino Acid Position:
69

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.8
0.37
1.3
61.1
39.6
Major BPS
65.9
0.4
1.1
57.5
39.1
Major PPT
88
0.85
0.8
80.8
36.8
Minor 5ss
28.1
-2.5
3.1
31.6
36.9
Minor BPS
45.1
-0.5
2.1
51.1
42.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004517
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004645
80494235 - 80498920
4686