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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_80497896_80498656_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
80497896 - 80498656
Intron Length:
761

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAACAT
5'SS Class:
strong_major
3'SS Sequence:
TTTATCTGCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTTTAT
U12 Branch Point Sequence:
TATCCTTTATCT
Flanking Amino Acid:
YLEGGKDSCQGDSGGPVVCN
Intron Amino Acid Position:
200

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
0.9
74
36.4
Major BPS
71.5
0.54
1.1
63.3
42.8
Major PPT
72.8
0.51
0.9
69
37
Minor 5ss
33
-1.9
3.3
47.4
48
Minor BPS
67.7
0.63
1.6
82.75
38.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004517
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004645
80494235 - 80498920
4686