Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_80658511_80658920_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

80658511 - 80658920

Intron Length:

410

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

AGT|GCATGTTTG

5'SS Class:

weak_major

3'SS Sequence:

CAAGATGGCAAAG|C

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

ATTGCAA

U12 Branch Point Sequence:

TTGCAACCAAGC

Flanking Amino Acid:

CHVSMLMLVSLLNPEEMTSR

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

57.7

0.18

1.5

57.4

Major BPS

0.18

1.3

69.4

37.7

Major PPT

45.4

-0.2

1.1

36.1

38.8

Minor 5ss

41.6

-0.9

3.9

58.1

46.5

Minor BPS

35.5

-1.1

2.1

47.5

Associated Gene:

Gene:

PRMT8

Ensembl Gene ID:

ENSAPLG00000008837

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034206

80658463 - 80691659

33197