About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_80660010_80672882_F

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
80660010 - 80672882
Intron Length:
12873

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGAAGA
5'SS Class:
strong_major
3'SS Sequence:
GCAGCTCTTCAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AACTGAT
U12 Branch Point Sequence:
CTTCCCACAAAG
Flanking Amino Acid:
AKAGAKKVYGNCSNITPLLQ
Intron Amino Acid Position:
93

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
71.7
40.1
Major BPS
74.7
0.61
0.9
63.4
35.6
Major PPT
57.1
0.16
1.1
52.5
41.7
Minor 5ss
32.4
-2
2.9
32.3
42
Minor BPS
46.2
-0.4
2
55.91
44.6

Associated Gene:

Gene:
PRMT8
Ensembl Gene ID:
ENSAPLG00000008837
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034206
80658463 - 80691659
33197