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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_80680397_80686685_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
80680397 - 80686685
Intron Length:
6289

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGGTAA
5'SS Class:
major
3'SS Sequence:
TCATTCTCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTTTTCATT
Flanking Amino Acid:
QVVTNACLIKEVDIYTVKTE
Intron Amino Acid Position:
266

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.3
0.48
1.2
65.7
36
Major BPS
100
1.24
0.5
100
0
Major PPT
83.5
0.75
0.8
81.3
30.5
Minor 5ss
38.5
-1.3
3
46.9
48.5
Minor BPS
67.5
0.63
1.7
86.64
33.8

Associated Gene:

Gene:
PRMT8
Ensembl Gene ID:
ENSAPLG00000008837
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034206
80658463 - 80691659
33197
ENSAPLT00000009196
80625982 - 80691659
65678