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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_80689485_80691575_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
80689485 - 80691575
Intron Length:
2091

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTCAG
5'SS Class:
strong_major
3'SS Sequence:
AATCTTTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TTACATTTAAAT
Flanking Amino Acid:
ISMKPNAKNVRDLDFTVDLD
Intron Amino Acid Position:
357

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
70.6
41.3
Major BPS
83
0.82
0.8
82
24.9
Major PPT
82.9
0.74
0.8
76.6
36.6
Minor 5ss
33.7
-1.9
2.9
38.1
40.9
Minor BPS
60
0.39
1.6
77.07
38.6

Associated Gene:

Gene:
PRMT8
Ensembl Gene ID:
ENSAPLG00000008837
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034206
80658463 - 80691659
33197
ENSAPLT00000009196
80625982 - 80691659
65678