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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_80709773_80714592_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
80709773 - 80714592
Intron Length:
4820

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTATAC
5'SS Class:
major
3'SS Sequence:
TCTTTGATCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TTCTCTTTGATC
Flanking Amino Acid:
PNGMGEHLAKDYNLIFYECS
Intron Amino Acid Position:
646

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1.1
65.1
35.6
Major BPS
83
0.82
0.8
82
24.9
Major PPT
73.7
0.53
0.9
66.3
39.5
Minor 5ss
37.2
-1.4
3.2
50.6
46
Minor BPS
73.6
0.73
1.1
76.92
33.8

Associated Gene:

Gene:
CRACR2A
Ensembl Gene ID:
ENSAPLG00000009227
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009614
80706608 - 80754073
47466