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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_80714695_80716370_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
80714695 - 80716370
Intron Length:
1676

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAACGTGA
5'SS Class:
major
3'SS Sequence:
CTTCAATCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTATCCTTCAAT
Flanking Amino Acid:
AVKQWLISIEEETGENVPVL
Intron Amino Acid Position:
612

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1.2
66.6
41.6
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
77
0.61
0.9
70
35.1
Minor 5ss
41.6
-0.9
3.2
56.2
47.9
Minor BPS
67.9
0.65
1.9
86.4
39.1

Associated Gene:

Gene:
CRACR2A
Ensembl Gene ID:
ENSAPLG00000009227
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009614
80706608 - 80754073
47466