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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_80716486_80717571_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
80716486 - 80717571
Intron Length:
1086

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGAAAC
5'SS Class:
major
3'SS Sequence:
TTCATACTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTCAT
U12 Branch Point Sequence:
TTCTGCTGAAGA
Flanking Amino Acid:
LQLWDTAGQERYRSITKQFF
Intron Amino Acid Position:
573

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
0.9
71.5
33.8
Major BPS
79.8
0.74
0.9
81.3
29.9
Major PPT
80.2
0.68
0.9
73.8
35.6
Minor 5ss
28.8
-2.4
2.8
35.7
40.8
Minor BPS
49.8
-0
2.2
67.78
44.7

Associated Gene:

Gene:
CRACR2A
Ensembl Gene ID:
ENSAPLG00000009227
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009614
80706608 - 80754073
47466