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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_80717654_80720038_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
80717654 - 80720038
Intron Length:
2385

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTCTA
5'SS Class:
strong_major
3'SS Sequence:
ATTTCTGTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
ATTTCTGTCACA
Flanking Amino Acid:
RFFPGTAATVGVDYNVKTIT
Intron Amino Acid Position:
546

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
87.1
30
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
78.3
0.64
0.9
72.5
37.1
Minor 5ss
37.8
-1.4
3
49.8
46.4
Minor BPS
51
0.02
2.4
73.1
39.3

Associated Gene:

Gene:
CRACR2A
Ensembl Gene ID:
ENSAPLG00000009227
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009614
80706608 - 80754073
47466