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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_80720172_80724895_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
80720172 - 80724895
Intron Length:
4724

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGGGGT
5'SS Class:
major
3'SS Sequence:
CTCTTACTTGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GACTAAT
U12 Branch Point Sequence:
TTGCTCTTACTT
Flanking Amino Acid:
QPAGKEALSNEEVIKSVPDR
Intron Amino Acid Position:
502

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1.1
69.9
40.7
Major BPS
69
0.47
1.2
69.9
35.3
Major PPT
71.4
0.48
1
71.8
32
Minor 5ss
33.4
-1.9
3.7
50.9
46
Minor BPS
61.1
0.43
1.6
76.51
40.7

Associated Gene:

Gene:
CRACR2A
Ensembl Gene ID:
ENSAPLG00000009227
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009614
80706608 - 80754073
47466