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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_80725221_80726675_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
80725221 - 80726675
Intron Length:
1455

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGAACT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTGTCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
TTTTTTGTAATC
Flanking Amino Acid:
KYIEGNVLPSSCSFEDDVFN
Intron Amino Acid Position:
393

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.1
1.02
0.7
87.2
27
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
79.5
0.66
0.8
73.6
37
Minor 5ss
36.1
-1.6
3
50.2
45.8
Minor BPS
61.9
0.35
2
77
33.7

Associated Gene:

Gene:
CRACR2A
Ensembl Gene ID:
ENSAPLG00000009227
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009614
80706608 - 80754073
47466