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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_80726768_80727586_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
80726768 - 80727586
Intron Length:
819

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGACT
5'SS Class:
strong_major
3'SS Sequence:
TATATTTGTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAGTAAA
U12 Branch Point Sequence:
TATTCTATATTT
Flanking Amino Acid:
LKDERDIFLQQCKTSARKAS
Intron Amino Acid Position:
363

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
78.5
35.4
Major BPS
67.4
0.43
1.1
67.9
36.3
Major PPT
78
0.63
1
73.3
41.5
Minor 5ss
34.3
-1.8
3.3
49.5
46.5
Minor BPS
56.4
0.28
1.8
77.94
38.7

Associated Gene:

Gene:
CRACR2A
Ensembl Gene ID:
ENSAPLG00000009227
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009614
80706608 - 80754073
47466