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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_80727633_80730486_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
80727633 - 80730486
Intron Length:
2854

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGCAA
5'SS Class:
major
3'SS Sequence:
TCCCTCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATATAC
U12 Branch Point Sequence:
TTGGCCTCAGTG
Flanking Amino Acid:
SGLLKQLDFLRERNKHLKDE
Intron Amino Acid Position:
347

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1
67.7
39
Major BPS
61.6
0.29
1
59
37.6
Major PPT
84.8
0.78
0.7
79.7
25.8
Minor 5ss
30.1
-2.3
3.2
38.5
46.5
Minor BPS
47.6
-0.3
1.9
55.28
46.3

Associated Gene:

Gene:
CRACR2A
Ensembl Gene ID:
ENSAPLG00000009227
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009614
80706608 - 80754073
47466