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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_80732702_80737178_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
80732702 - 80737178
Intron Length:
4477

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTATTAAGA
5'SS Class:
major
3'SS Sequence:
TCTTCCACTCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
TTTTCTTCCACT
Flanking Amino Acid:
LEQLVQNQKRLEQQCTELLS
Intron Amino Acid Position:
261

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.4
0.32
1.1
57.2
41.7
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
79.7
0.67
0.8
70.8
34.7
Minor 5ss
38.6
-1.3
2.8
40.7
45
Minor BPS
64.5
0.54
2
87.98
37.6

Associated Gene:

Gene:
CRACR2A
Ensembl Gene ID:
ENSAPLG00000009227
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009614
80706608 - 80754073
47466