About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_80745743_80747139_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
80745743 - 80747139
Intron Length:
1397

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGA|GTGAGTTTT
5'SS Class:
major
3'SS Sequence:
TCTTTTGTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
TCTTTTATAATC
Flanking Amino Acid:
DRLGAKKVLEDESDVKQLWL
Intron Amino Acid Position:
149

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75
0.59
1
77.7
33.3
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
89.3
0.88
0.8
87.9
29.4
Minor 5ss
42
-0.9
3
54.7
43.6
Minor BPS
60.7
0.31
1.6
70.1
35.9

Associated Gene:

Gene:
CRACR2A
Ensembl Gene ID:
ENSAPLG00000009227
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009614
80706608 - 80754073
47466