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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_80747306_80749439_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
80747306 - 80749439
Intron Length:
2134

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTGAGTTTG
5'SS Class:
major
3'SS Sequence:
TTTTAAATCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TAATTTTTAAAT
Flanking Amino Acid:
LTPKEFTTGFSQFLLGQIAL
Intron Amino Acid Position:
94

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1
68.9
38.5
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
73.9
0.54
0.9
71.7
37.9
Minor 5ss
40.6
-1.1
3
54.8
43.4
Minor BPS
68.6
0.66
1.3
78.99
36.6

Associated Gene:

Gene:
CRACR2A
Ensembl Gene ID:
ENSAPLG00000009227
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009614
80706608 - 80754073
47466