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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_80751302_80753970_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
80751302 - 80753970
Intron Length:
2669

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTCAGTCTG
5'SS Class:
major
3'SS Sequence:
CTACCATGCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
CTTTTCTTATCT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1.3
72.7
44.5
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
63.3
0.3
1
56.9
37.5
Minor 5ss
33.2
-1.9
2.9
41.4
45
Minor BPS
72.9
0.8
1.6
87.15
38.9

Associated Gene:

Gene:
CRACR2A
Ensembl Gene ID:
ENSAPLG00000009227
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009614
80706608 - 80754073
47466