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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_80778429_80778903_R

Intron Information:

Intron Rank:
12
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
80778429 - 80778903
Intron Length:
475

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TAAAATTTGCAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTTTTTAAAA
Flanking Amino Acid:
NGMHAAVYGKGTYFARDASY
Intron Amino Acid Position:
545

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
100
1.18
0.6
100
0
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
51
0.02
1.2
49.3
47.5
Minor 5ss
41.7
-0.9
2.9
59.7
44.8
Minor BPS
76.9
0.84
1.2
83.98
29.3

Associated Gene:

Gene:
PARP11
Ensembl Gene ID:
ENSAPLG00000018611
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009857
80777544 - 80898142
120599