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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_80779056_80780601_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
80779056 - 80780601
Intron Length:
1546

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGATTA
5'SS Class:
strong_major
3'SS Sequence:
GTGTTCTCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
ATGTTTATAATA
Flanking Amino Acid:
QNLDLWEFFCRKKAQLKKKR
Intron Amino Acid Position:
494

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
82.9
23.9
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
76.6
0.6
0.8
74.4
36.5
Minor 5ss
36.1
-1.6
3.2
46.9
48.4
Minor BPS
56.2
0.19
1.5
65.72
35.1

Associated Gene:

Gene:
PARP11
Ensembl Gene ID:
ENSAPLG00000018611
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009857
80777544 - 80898142
120599