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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_80780733_80780821_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
80780733 - 80780821
Intron Length:
89

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTCCCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCACAT
U12 Branch Point Sequence:
AATGTGTTAACC
Flanking Amino Acid:
ENVNPEEPYQLIPLQKKTNE
Intron Amino Acid Position:
451

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95
1.06
0.7
93.7
19.9
Major BPS
77.7
0.69
1
83.3
27.7
Major PPT
90.7
0.92
0.6
84.9
29.9
Minor 5ss
39.4
-1.2
3.1
57.6
46.6
Minor BPS
51.8
0.03
2.1
65.22
40.5

Associated Gene:

Gene:
PARP11
Ensembl Gene ID:
ENSAPLG00000018611
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009857
80777544 - 80898142
120599