Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_80780895_80782400_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

80780895 - 80782400

Intron Length:

1506

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGGAAA

5'SS Class:

strong_major

3'SS Sequence:

TGTTTGTTTGAAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTAC

U12 Branch Point Sequence:

GTGTTTTTACCC

Flanking Amino Acid:

KRAPFSISAFSLICDNEAIP

Intron Amino Acid Position:

426

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

91.6

0.98

0.8

28.8

Major BPS

86.6

0.91

0.8

77.7

36.7

Major PPT

74.5

0.55

1.1

75.2

38.8

Minor 5ss

31.6

-2.1

3.1

46.4

Minor BPS

58.4

0.24

1.6

65.93

40.3

Associated Gene:

Gene:

PARP11

Ensembl Gene ID:

ENSAPLG00000018611

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009857

80777544 - 80898142

120599