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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_80783820_80783914_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
80783820 - 80783914
Intron Length:
95

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTACA
5'SS Class:
strong_major
3'SS Sequence:
ATTTATTTTGAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATTTATT
Flanking Amino Acid:
AECGKWHMFQTDSNSHCSVS
Intron Amino Acid Position:
361

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
1.1
80.7
33.8
Major BPS
100
1.24
0.5
100
0
Major PPT
75.3
0.57
1.1
76
37.3
Minor 5ss
41.6
-0.9
2.5
52.6
44
Minor BPS
67.6
0.63
1.9
89.45
34.7

Associated Gene:

Gene:
PARP11
Ensembl Gene ID:
ENSAPLG00000018611
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009857
80777544 - 80898142
120599