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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_80809212_80809994_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
80809212 - 80809994
Intron Length:
783

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGCCA
5'SS Class:
major
3'SS Sequence:
TGCTTTCCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTCAT
U12 Branch Point Sequence:
CATTCCTGTACT
Flanking Amino Acid:
SIGMCILIMQILGMAFSMTL
Intron Amino Acid Position:
217

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1
65.1
40.5
Major BPS
78.6
0.71
1
79.6
32.9
Major PPT
83.6
0.76
0.8
81.3
30.8
Minor 5ss
31.1
-2.2
3.2
40.1
45.4
Minor BPS
61.3
0.44
1.9
78.11
43.8

Associated Gene:

Gene:
PARP11
Ensembl Gene ID:
ENSAPLG00000018611
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038746
80808453 - 80975081
166629
ENSAPLT00000037999
80808453 - 80898142
89690
ENSAPLT00000018662
80809140 - 80975081
165942