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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_80810079_80810188_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
80810079 - 80810188
Intron Length:
110

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGACTT
5'SS Class:
strong_major
3'SS Sequence:
TTTCGTCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAA
U12 Branch Point Sequence:
GGGAATTCAATT
Flanking Amino Acid:
RNSTELVWKTGCYERVMTWF
Intron Amino Acid Position:
290

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
1
75.8
40
Major BPS
74.2
0.6
0.9
75.7
28
Major PPT
85.6
0.8
0.8
77.2
37.1
Minor 5ss
38.4
-1.3
3.4
58.3
45.6
Minor BPS
45
-0.3
1.7
55.64
40.4

Associated Gene:

Gene:
PARP11
Ensembl Gene ID:
ENSAPLG00000018611
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037999
80808453 - 80898142
89690
ENSAPLT00000018662
80809140 - 80975081
165942
ENSAPLT00000009857
80777544 - 80898142
120599
ENSAPLT00000038746
80808453 - 80975081
166629