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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_80812330_80813894_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
80812330 - 80813894
Intron Length:
1565

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCAAA
5'SS Class:
strong_major
3'SS Sequence:
TTATATGATGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTGTATTTATAT
Flanking Amino Acid:
LILFFVYMDKVSESAKKDLK
Intron Amino Acid Position:
212

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
83.2
30.8
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
67.8
0.4
1
63
42.8
Minor 5ss
38.7
-1.3
2.8
48.1
47.6
Minor BPS
52.2
0.15
1.9
74
42.8

Associated Gene:

Gene:
PARP11
Ensembl Gene ID:
ENSAPLG00000018611
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037999
80808453 - 80898142
89690
ENSAPLT00000018662
80809140 - 80975081
165942
ENSAPLT00000009857
80777544 - 80898142
120599
ENSAPLT00000038746
80808453 - 80975081
166629