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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_80815773_80897776_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
80815773 - 80897776
Intron Length:
82004

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TATCTCTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTGTTTATCT
Flanking Amino Acid:
MMFLFNLIFWLCGCGLLGVG
Intron Amino Acid Position:
123

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.1
0.8
0.9
80.5
33.9
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
86.3
0.82
0.7
80.9
30.6
Minor 5ss
32.5
-2
2.7
35.6
40.5
Minor BPS
64.5
0.53
2
87.39
38.7

Associated Gene:

Gene:
PARP11
Ensembl Gene ID:
ENSAPLG00000018611
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037999
80808453 - 80898142
89690
ENSAPLT00000018662
80809140 - 80975081
165942
ENSAPLT00000009857
80777544 - 80898142
120599