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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_80815773_80974716_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
80815773 - 80974716
Intron Length:
158944

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGCCCC
5'SS Class:
major
3'SS Sequence:
TATCTCTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTGTTTATCT
Flanking Amino Acid:
PSPARSGDVRLCGCGLLGVG
Intron Amino Acid Position:
101

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.2
0.55
1.1
56.7
42.7
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
86.3
0.82
0.7
80.9
30.6
Minor 5ss
33.3
-1.9
3
35.1
41
Minor BPS
64.5
0.53
2
87.39
38.7

Associated Gene:

Gene:
PARP11
Ensembl Gene ID:
ENSAPLG00000018611
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038746
80808453 - 80975081
166629