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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_81004744_81005911_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
81004744 - 81005911
Intron Length:
1168

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTGAGTATT
5'SS Class:
major
3'SS Sequence:
TGTATATCTGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTATTTTTAACC
Flanking Amino Acid:
PLPGQAGSSQDVKPFSQQPY
Intron Amino Acid Position:
193

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
80.7
33.7
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
73.2
0.52
0.9
67.2
39.3
Minor 5ss
37.5
-1.4
3
47.9
41.8
Minor BPS
79.9
0.92
1
82.59
30.6

Associated Gene:

Gene:
TEAD4
Ensembl Gene ID:
ENSAPLG00000010018
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010501
80998221 - 81031383
33163