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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_81005956_81006876_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
81005956 - 81006876
Intron Length:
921

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TGTTGTTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGATGAC
U12 Branch Point Sequence:
ATTGCCTGTATG
Flanking Amino Acid:
PRPAYPAVSGFWQGPLPGQA
Intron Amino Acid Position:
179

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
0.9
73.7
32.5
Major BPS
59.6
0.24
1.2
51.4
43.9
Major PPT
86.1
0.81
0.8
80.6
37
Minor 5ss
26.1
-2.7
2.9
22.6
37.5
Minor BPS
48.3
-0.2
2
58.33
43.7

Associated Gene:

Gene:
TEAD4
Ensembl Gene ID:
ENSAPLG00000010018
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010501
80998221 - 81031383
33163