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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_81007012_81010777_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
81007012 - 81010777
Intron Length:
3766

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTATGG
5'SS Class:
major
3'SS Sequence:
CTCTTGTCCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
TCTCTTTCTACT
Flanking Amino Acid:
KAREIQAKLKDQAAKDKAMQ
Intron Amino Acid Position:
134

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.7
0.49
1.1
57.9
41.8
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
74.2
0.54
0.8
72.8
32
Minor 5ss
43.5
-0.7
2.8
56.7
47.4
Minor BPS
48.4
-0
1.8
68.96
42

Associated Gene:

Gene:
TEAD4
Ensembl Gene ID:
ENSAPLG00000010018
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010501
80998221 - 81031383
33163