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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_81011783_81031112_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
81011783 - 81031112
Intron Length:
19330

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGGAGA
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTGTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
TTTCTCTAAAAT
Flanking Amino Acid:
IILSDEGKMYGRNELIARYI
Intron Amino Acid Position:
91

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
1
71.4
40.1
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
85.8
0.81
0.8
84.1
30.9
Minor 5ss
31.8
-2.1
3.1
36.7
42.5
Minor BPS
62
0.45
1.8
82.38
38.6

Associated Gene:

Gene:
TEAD4
Ensembl Gene ID:
ENSAPLG00000010018
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010501
80998221 - 81031383
33163