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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_81059158_81059568_R

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
81059158 - 81059568
Intron Length:
411

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAACC
5'SS Class:
strong_major
3'SS Sequence:
AACCTAACATTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
CTTTCCATAACC
Flanking Amino Acid:
REGESFIGKLRSNLMGTKFT
Intron Amino Acid Position:
295

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.4
0.88
0.8
77.7
30.1
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
53.4
0.08
0.9
50.3
37.3
Minor 5ss
29.3
-2.4
2.8
35.3
40.9
Minor BPS
75.1
0.77
1.6
83.65
35.8

Associated Gene:

Gene:
TULP3
Ensembl Gene ID:
ENSAPLG00000010842
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042238
81053572 - 81086384
32813
ENSAPLT00000034053
81053572 - 81068187
14616
ENSAPLT00000019436
81053572 - 81090380
36809
ENSAPLT00000011307
81053572 - 81081115
27544