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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_81060359_81061904_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
81060359 - 81061904
Intron Length:
1546

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAGGTGTT
5'SS Class:
major
3'SS Sequence:
GTTCTTTCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTGAT
U12 Branch Point Sequence:
GGTTTGCTAATA
Flanking Amino Acid:
SSATSEKSFAETGASCSPSP
Intron Amino Acid Position:
192

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69
0.45
1.1
70.3
40.5
Major BPS
82.5
0.81
0.8
71.4
36.6
Major PPT
81.4
0.71
0.8
76.1
32.5
Minor 5ss
39.4
-1.2
3.7
62.7
43.1
Minor BPS
46.2
-0.2
2.3
61.09
39.1

Associated Gene:

Gene:
TULP3
Ensembl Gene ID:
ENSAPLG00000010842
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034053
81053572 - 81068187
14616
ENSAPLT00000019436
81053572 - 81090380
36809
ENSAPLT00000011307
81053572 - 81081115
27544
ENSAPLT00000042238
81053572 - 81086384
32813