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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_81066140_81067250_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
81066140 - 81067250
Intron Length:
1111

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTTGA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTTTCTTTATTT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
0.9
73.9
33
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
90.2
0.9
0.7
89.1
26.1
Minor 5ss
35.8
-1.6
2.8
40.4
40
Minor BPS
76.2
0.9
1.4
91.47
32.2

Associated Gene:

Gene:
TULP3
Ensembl Gene ID:
ENSAPLG00000010842
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034053
81053572 - 81068187
14616