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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_81066140_81071276_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
81066140 - 81071276
Intron Length:
5137

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATGAT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTTTCTTTATTT
Flanking Amino Acid:
KLRQLKLENQRALLEKKQRK
Intron Amino Acid Position:
34

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
83.8
27.2
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
90.2
0.9
0.7
89.1
26.1
Minor 5ss
33.7
-1.9
3.4
48.7
47.5
Minor BPS
76.2
0.9
1.4
91.47
32.2

Associated Gene:

Gene:
TULP3
Ensembl Gene ID:
ENSAPLG00000010842
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042238
81053572 - 81086384
32813
ENSAPLT00000019436
81053572 - 81090380
36809
ENSAPLT00000011307
81053572 - 81081115
27544