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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_81071329_81081068_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
81071329 - 81081068
Intron Length:
9740

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGCTTT
5'SS Class:
weak_major
3'SS Sequence:
TTCACTTTCGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTATCTTTCACT
Flanking Amino Acid:
FSWSSFQKKDSIFEDEGMKL
Intron Amino Acid Position:
16

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
80.5
35
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
80.8
0.69
0.8
76.1
32.2
Minor 5ss
70.5
0.69
2.2
81.8
38.5
Minor BPS
72.5
0.79
1.7
88.57
36.5

Associated Gene:

Gene:
TULP3
Ensembl Gene ID:
ENSAPLG00000010842
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011307
81053572 - 81081115
27544