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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_81071329_81086331_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
81071329 - 81086331
Intron Length:
15003

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTTGTATA
5'SS Class:
major
3'SS Sequence:
TTCACTTTCGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTATCTTTCACT
Flanking Amino Acid:
SAERRNLLRLSIFEDEGMKL
Intron Amino Acid Position:
18

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1.1
80.9
32.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
80.8
0.69
0.8
76.1
32.2
Minor 5ss
41.8
-0.9
2.5
51.7
44.8
Minor BPS
72.5
0.79
1.7
88.57
36.5

Associated Gene:

Gene:
TULP3
Ensembl Gene ID:
ENSAPLG00000010842
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042238
81053572 - 81086384
32813