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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_81071329_81086756_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
81071329 - 81086756
Intron Length:
15428

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
TTCACTTTCGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTATCTTTCACT
Flanking Amino Acid:
SAGGRGTAGAGIFEDEGMKL
Intron Amino Acid Position:
20

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
68.4
38.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
80.8
0.69
0.8
76.1
32.2
Minor 5ss
26.1
-2.7
2.9
22.8
37.4
Minor BPS
72.5
0.79
1.7
88.57
36.5

Associated Gene:

Gene:
TULP3
Ensembl Gene ID:
ENSAPLG00000010842
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019436
81053572 - 81090380
36809