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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_81094035_81094239_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
81094035 - 81094239
Intron Length:
205

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCAGG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTGTCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTCAT
U12 Branch Point Sequence:
AGCTCTTTGAGC
Flanking Amino Acid:
NQIPLQEKIKTEEDSTAVAI
Intron Amino Acid Position:
233

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
72.7
44.5
Major BPS
74.8
0.62
0.9
75.3
29.7
Major PPT
85.5
0.8
0.8
84.4
30.5
Minor 5ss
38.8
-1.3
2.8
48.8
47
Minor BPS
54
0.11
1.6
60.12
39.6

Associated Gene:

Gene:
FOXM1
Ensembl Gene ID:
ENSAPLG00000011353
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011827
81091415 - 81099435
8021