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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_81094465_81094889_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
81094465 - 81094889
Intron Length:
425

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACAAGT
5'SS Class:
major
3'SS Sequence:
CCTTTTTCTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAG
U12 Branch Point Sequence:
TGCTATTCAGTT
Flanking Amino Acid:
FKHVAKPGWKNSIRHNLSLH
Intron Amino Acid Position:
308

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1.1
75.5
40.6
Major BPS
68.2
0.45
1.5
77.7
37.1
Major PPT
87.7
0.85
0.7
80.3
31.7
Minor 5ss
40.7
-1
3
58.6
45.5
Minor BPS
45.3
-0.2
1.9
61.73
42.6

Associated Gene:

Gene:
FOXM1
Ensembl Gene ID:
ENSAPLG00000011353
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011827
81091415 - 81099435
8021