About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_81095646_81096580_F


Intron Information:

Intron Rank:
5

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
81095646 - 81096580

Intron Length:
935

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
TCA|GTAAGACTT

5'SS Class:
major

3'SS Sequence:
ACAATGTCTACAG|C

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TTTACAA

U12 Branch Point Sequence:
TCTTCCTTATTT

Flanking Amino Acid:
SPTSPEHSESQQKRHVPDLQ

Intron Amino Acid Position:
366

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
72.8
0.54
1.1
69.6
41.1

Major BPS
73.5
0.59
1
81.3
29.9

Major PPT
66.3
0.37
1
57.7
42.4

Minor 5ss
40.1
-1.1
3.4
63.1
41.9

Minor BPS
75.3
0.87
1.5
87.57
38.6

Associated Gene:

Gene:
FOXM1

Ensembl Gene ID:

Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

81091415 - 81099435
8021