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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_81096654_81097105_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
81096654 - 81097105
Intron Length:
452

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTAAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACAAAT
U12 Branch Point Sequence:
AGGCTAACAAAT
Flanking Amino Acid:
SSSKTEPQNARRKMKPLLPR
Intron Amino Acid Position:
390

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1.3
79.6
34.4
Major BPS
60.7
0.27
1
65.3
28.1
Major PPT
89.5
0.89
0.6
81.6
30.4
Minor 5ss
38.6
-1.3
3.3
51.8
38.6
Minor BPS
37
-0.9
1.8
48.75
36.8

Associated Gene:

Gene:
FOXM1
Ensembl Gene ID:
ENSAPLG00000011353
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011827
81091415 - 81099435
8021